Publications

Overview

All VPR publications can be found below ordered by year of publication. You may sort by type of publication, keywords, associated research project or search by abstract, title or author.

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Search Title, Authors, Abstract, Year

2012

Dahl Salt-Sensitive Rats are Protected Against Vascular Defects Related to Diet-Induced Obesity.
Beyer AM, Raffai G, Weinberg B, Fredrich K, Lombard JH
Hypertension 60: 404-10, 2012. PMID: 22710645, PMCID: PMC3444144
A Biophysical Model of the Mitochondrial ATP-Mg/P(i) Carrier
Tewari SG, Dash RK, Beard DA, Bazil JN
Biophys J. 103(7): 1616-2, 2012. PMID: 23062354, PMCID: PMC3471468
Interpreting genetic effects through models of cardiac electromechanics.
Niederer SA, Land S, Omholt SW, Smith NP
AJP – Heart 303(11): H1294-H1303, 2012. PMID: 23042948, PMCID: PMC3532540
Modelling cell function
Bassingthwaighte JB, Boyle C, Pichardo C, Diaz V
Personalized Computational Biomedicine: A Guide to the Virtual Physiological Human pp 001-0NN, edited by Coveney P and Noble D. London, UK: Royal Society of London, 2012.
An atlas-based geometry pipeline for cardiac hermite model construction and diffusion tensor reorientation
Zhang Y, Liang X, Ma J, Jing Y, Gonzales MJ, Villongco C, Krishnamurthy A, Frank LR, Nigam V, Stark P, Narayan SM, McCulloch AD
Med Imag Anal 16: 1130-41, 2012. PMID: 22841777, PMCID: PMC3443263
Specification, construction, and exact reduction of state transition system models of biochemical processes
Bugenhagen SM, Beard DA
J Chem Phys. 137(15): 154108, 2012.  PMCID: PMC3487925
Myocardial twitch duration and the dependence of oxygen consumption on pressure-volume area: Experiments and modelling.
Han JC, Tran K, Taberner AJ, Nickerson DP, Kirton RS, Nielsen PMF, Ward ML, Nash MP, Crampin EJ, Loiselle DS
Journal of Physiology. 590(18): 4401-22, 2012. PMCID: PMC3477760
Patient specific parameter estimation and heart rate regulation
Olufsen MS, Ottesen JT
J Math Biol. 23:1350078, 2012.
Simulation of rarefaction: impact on blood pressure in the systemic and pulmonary large and small arteries.
Olufsen MS, Hill NA, Vaughan GA, Sainsbury C, Johnson M
J Fluid Mech. 705: 280-305, 2012. PMID: 22962497 PMCID: PMC3433075
Modeling to link regional myocardial work, metabolism, and blood flows
Bassingthwaighte JB, Beard DA, Carlson BE, RK Dash, KC Vinnakota
Ann Biomed Eng. 40(11): 2379-98. PMCID: PMC3471663
Physiologically based pharmacokinetic tissue compartment model selection in drug development and risk assessment
Thompson MD, Beard DA
J Pharm Sci. 1: 424-35, 2012. PMCID: PMC3314064
Mechanisms of pressure-diuresis and pressure-natriuresis in Dahl salt-resistant and Dahl salt-sensitive rats
Beard, DA, Mescam M
BMC Physiol.  12: 6. PMCID: PMC3536597
Use of partition coefficients in flow-limited physiologically based pharmacokinetic modeling
Thompson MD, Beard DA
J Pharmacokinet Pharmacodyn. 39(4): 313-27, 2012. PMCID: PMC3400708
Multiscale modeling and data integration in the Virtual Physiological Rat Project
Beard DA, Neal ML, Tabesh-Saleki N, Thompson CT, Bassingthwaighte JB, Shimoyama M, Carlson BE
Ann Biomed Eng. 40(11): 2365-78, 2012. PMID: 22805979 PMCID: PMC3463790
Parameters in dynamic models of complex traits are containers of missing heritability
Wang Y, Gjuvsland A, Vik JP, Smith NP, Hunter PJ, Omholt SW
PLoS Computational Biology 8(4): e1002459, 2012. PMCID: PMC3320574
Biosimulation: Simulation of Living Systems
Beard DA
Biosimulation: Simulation of Living Systems. Cambridge University Press; 1 edition. 2012

2011

Characterization of Mg2+ inhibition of mitochondrial Ca2+ uptake by a mechanistic model of mitochondrial Ca2+ uniporter
Pradhan RK, Qi F, Beard DA, Dash RK
Biophys J. 101(9): 2071-81, 2011. PMID: 22067144, PMCID: PMC3207172
Development of appropriate equations for physiologically based pharmacokinetic modeling of permeability-limited and flow-limited transport
Thompson MD, Beard DA
J Pharmacokinet Pharmacodyn. 38(4): 405-21, 2011. PMID: 21584718, PMCID: PMC3193163
Comparison of models and acquisition techniques for estimation of myocardial blood flow from CT.
Alessio AM, Branch KR, Caldwell JH, Bassingthwaighte JB
Proc SPIE 7965: 11.1-11.6, 2011.
A parallel algorithm for reverse engineering of biological networks
Bazil JN, Qi F, Beard DA
Integr Biol. 3: 1215-23, 2011. PMCID: PMC3424073

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